ontotext1e
Get ontology term(s) original full text
Usage
ontotext -oboterms
obo
[-subclasses
boolean]
[-obsolete
boolean]
-outfile
outfile
ontotext -help
Overview
ontotext is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Ontology,Data retrieval:Ontology data,Data retrieval:Text data" command group(s).
Options
Input section
-
-oboterms obo
Additional section
-
-subclasses boolean -
Extend the query matches to include all terms which are specialisations (sub-classes) of the matched terms. Default value: N
-
-obsolete boolean -
The default behaviour is to not use or return obsolete terms. This option if set will include all terms. Default value: N
Advanced section
Output section
-
-outfile outfile
Releases
Unchanged in 7 releases since Debian 7 (Wheezy).