obicomplement1
Description of obicomplement obicomplement reverse-complements the sequence records. by using the selection option set, it is possible to reverse complement only a subset of the sequence records included in the input file. the selected sequence are reversed complemented, others are stored without modification
Options to specify input format
Restrict the analysis to a sub-part of the input file
- --skip <N>
-
The N first sequence records of the file are discarded from the analysis and not reported to the output file
- --only <N>
-
Only the N next sequence records of the file are analyzed. The following sequences in the file are neither analyzed, neither reported to the output file. This option can be used conjointly with the –skip option.
Sequence annotated format
--genbank-
Input file is in genbank format.
--embl-
Input file is in embl format.
fasta related format
--fasta-
Input file is in fasta format (including OBITools fasta extensions).
fastq related format
--sanger-
Input file is in Sanger fastq format (standard fastq used by HiSeq/MiSeq sequencers).
--solexa-
Input file is in fastq format produced by Solexa (Ga IIx) sequencers.
ecoPCR related format
--ecopcr-
Input file is in ecoPCR format.
--ecopcrdb-
Input is an ecoPCR database.
Specifying the sequence type
--nuc-
Input file contains nucleic sequences.
--prot-
Input file contains protein sequences.
Options
-
-h, --help -
Shows this help message and exits.
-
--DEBUG -
Sets logging in debug mode.