nthash1
Recursive hash function for hashing all possible k-mers in a dna/rna sequence
Usage
ntHash -k
VAR
-o
VAR
[-f
VAR]
[-h]
[-s
VAR]
[--long]
[--binary]
[--verbose]
files
Overview
Unknown argument: --help
Positional arguments:
- files
-
Input sequence files [nargs: 0 or more] [required]
Optional arguments:
-v, --version prints version information and exits
-
-k -
k-mer size [required]
-
-o -
Output file (for
-fcollect) or directory path [required]
-
-f -
Output file organization (store hashes for each 'file', 'record', or 'collect' all hashes into a single file [default: "file"]
-
-h -
Number of hashes per k-mer/seed [default: 1]
-
-s -
Input spaced seed patterns separated by commas (e.g. 1110111,11011011). Performs k-mer hashing if no value provided.
-
--long -
Optimize file reader for long sequences (>5kbp)
-
--binary -
Output hashes in binary files (otherwise plain text)
-
--verbose -
Print progress to stdout
Releases
Unchanged in 2 releases since Debian 12 (Bookworm).