nps2gps1
Convert nucleotide-protein sets to asn.1 genomic product sets
Usage
nps2gps [-]
[-B]
[-D]
[-F]
[-G
str]
[-L]
[-N]
[-P]
[-Q]
[-R]
[-S]
[-T]
[-U]
[-f
str]
[-i
filename]
[-o
filename]
[-p
path]
[-r
path]
[-x
str]
Overview
nps2gps converts NCBI Bioseq-sets from simple nucleotide-protein sets to full genomic product sets complete with mRNA transcripts, which it outputs as text ASN.1.
Options
A summary of options is included below.
--
Print usage message
-
-B -
NG and NR rRNA
-
-D -
RefSeq mRNA Titles
-
-F -
Map by Feature ID
-
-G str -
General ID database name
-
-L -
Lock components in advance
-
-N -
Promote Non-coding RNAs
-
-P -
mRNA ID from Protein
-
-Q -
Special mRNA titles
-
-R -
Enable Remote fetching from ID
-
-S -
Special ncRNA on preRNA
-
-T -
Map by Transcript ID
-
-U -
Remove Unnecessary gene cross-references
-
-f str -
Substring filter
-
-i filename -
Single input file (default = stdin)
-
-o filename -
Single output file (default = stdout)
-
-p path -
Path to files for batch conversion
-
-r path -
Path for results of batch conversion
-
-x str -
File selection suffix for batch conversion (default =
.ent)
Releases
10 releases since Debian 4.0 (Etch); the text changed 4 times.
-B since Debian 9 (Stretch);
-D since Debian 6.0 (Squeeze);
-F since Debian 5.0 (Lenny);
-G since Debian 7 (Wheezy);
-N since Debian 7 (Wheezy);
-P since Debian 5.0 (Lenny);
-Q since Debian 7 (Wheezy);
-S since Debian 9 (Stretch);
-T since Debian 7 (Wheezy);
-U since Debian 7 (Wheezy).