newcpgreport1e
Identify cpg islands in nucleotide sequence(s)
Usage
newcpgreport -sequence
seqall
-window
integer
-shift
integer
-minlen
integer
-minoe
float
-minpc
float
-outfile
outfile
newcpgreport -help
Overview
newcpgreport is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:CpG Islands" command group(s).
Options
Input section
-
-sequence seqall
Required section
-
-window integer -
Default value: 100
-
-shift integer -
Default value: 1
-
-minlen integer -
Default value: 200
-
-minoe float -
Default value: 0.6
-
-minpc float -
Default value: 50.
Output section
-
-outfile outfile
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.