needle-count(1) on Linux
The text e3c01bea6ad4, as Debian 13 (Trixie) shipped it. The page shows this text now.
Get expression value depending on minimizers. This function is an alternative to pseudoaligners like kallisto. It estimates the expression value for all sequences in the genome file based on the exact minimiser occurrences of the given sequence files. Please run genome beforehand to create the genome file.
Flags it lists
-
--advanced-help -
--copyright -
--export-help -
--genome -
--help -
--include -
--out -
--paired -
--version -
-h -
-hh -
-o -
-p