mia-2dsegshiftperslice1
Translate a segmentation by the given amount.
Usage
mia-2dsegshiftperslice -i
<in-file>
-o
<out-file>
-S
<shift>
[options]
Overview
mia-2dsegshiftperslice This program move the segmentation(s) of an image series by using a shift that is given on a per-slice base. The program can be used to correct the segmentation of the images if a linear registration was executed that only applies a translation and does not correct the segmentation automatically.
Options
-i --in-file=(required, input); string
|
input segmentation set |
|---|---|
-o --out-file=(required, output); string
|
output segmentation set |
-g --image-file=crop
|
output image filename base |
-S --shift=(required); string
|
shift of segmentation - base name |
Help & Info
- -V --verbose=warning
-
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
trace ‐ Function call trace
debug ‐ Debug output
info ‐ Low level messages
message ‐ Normal messages
warning ‐ Warnings
fail ‐ Report test failures
error ‐ Report errors
fatal ‐ Report only fatal errors
-
--copyright -
print copyright information
-
-h --help -
print this help
-
-? --usage -
print a short help
-
--version -
print the version number and exit
Processing
-
--threads=-1 -
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
Examples
Shirt the segmentation given in set segment.set by files shiftXXXX.txt and store the result in shifted.set. Note, the numbering of the shiftXXXX.txx files must coincide.
mia-2dsegshiftperslice -i segment.set -o shifted.set -g shifted -S shift
AUTHOR(s)
Gert Wollny
Releases
5 releases since Debian 8 (Jessie); the text changed 4 times.