metaphlan2(1) on Linux
The text 755ca2a94573, as Debian 11 (Bullseye), Debian 10 (Buster), Debian 9 (Stretch) shipped it. The page shows this text now.
METAgenomic PHyLogenetic ANalysis for metagenomic taxonomic profiling
Flags it lists
-
--avoid_disqm -
--biom -
--biom_output_file -
--bowtie2_exe -
--bowtie2db -
--bowtie2out -
--clade -
--help -
--ignore_archaea -
--ignore_bacteria -
--ignore_eukaryotes -
--ignore_markers -
--ignore_viruses -
--input_type -
--mdelim -
--metadata_delimiter_char -
--min_ab -
--min_alignment_len -
--min_cu_len -
--mpa_pkl -
--no_map -
--nproc -
--nreads -
--pres_th -
--samout -
--sample_id -
--sample_id_key -
--stat -
--stat_q -
--tax_lev -
--tmp_dir -
--version -
-h -
-s -
-v