merger1e
Merge two overlapping sequences
Usage
merger -asequence
sequence
-bsequence
sequence
[-datafile
matrixf]
[-gapopen
float]
[-gapextend
float]
-outfile
align
-outseq
seqout
merger -help
Overview
merger is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Consensus" command group(s).
Options
Input section
-
-asequence sequence
-
-bsequence sequence
-
-datafile matrixf -
This is the scoring matrix file used when comparing sequences. By default it is the file 'EBLOSUM62' (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These files are found in the 'data' directory of the EMBOSS installation.
Additional section
-
-gapopen float -
Default value: @($(acdprotein)? 50.0 : 50.0 )
-
-gapextend float -
Default value: @($(acdprotein)? 5.0 : 5.0)
Output section
-
-outfile align
-
-outseq seqout
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.