megamerger1e
Merge two large overlapping dna sequences
Usage
megamerger -asequence
sequence
-bsequence
sequence
-wordsize
integer
[-prefer
boolean]
-outseq
seqout
-outfile
outfile
megamerger -help
Overview
megamerger is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Consensus" command group(s).
Options
Input section
-
-asequence sequence
-
-bsequence sequence
Required section
-
-wordsize integer -
Default value: 20
Additional section
-
-prefer boolean -
When a mismatch between the two sequence is discovered, one or other of the two sequences must be used to create the merged sequence over this mismatch region. The default action is to create the merged sequence using the sequence where the mismatch is closest to that sequence's centre. If this option is used, then the first sequence (seqa) will always be used in preference to the other sequence when there is a mismatch. Default value: N
Output section
-
-outseq seqout
-
-outfile outfile
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.