megahit_toolkit1
Ultra-fast and memory-efficient meta-genome assembler
Usage
megahit_toolkit <sub_program>
[sub
options]
Overview
|
sub-programs: |
|
assemble
|
assemble from SdBG |
local
|
local asssembly |
iterate
|
extract iterative edges |
buildlib
|
build read library |
count
|
kmer counting |
read2sdbg
|
build sdbg from reads |
seq2sdbg
|
build sdbg from megahit contigs + edges |
contig2fastg
|
convert MEGAHIT's k*.contigs.fa to fastg format |
readstat
|
calculate read stats (# of reads, bases, longest, shortest, average) |
filterbylen
|
filter contigs by length |
checkcpu
|
check whether the run-time CPU supports POPCNT and BMI2 |
checkpopcnt
|
check whether the run-time CPU supports POPCNT |
checkbmi2
|
check whether the run-time CPU supports BMI2 |
dumpversion
|
dump version |
kmax
|
the largest k value supported |
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).