mason_frag_sequencing(1) on Linux
The text e602a02fa140, as Debian 13 (Trixie), Debian 12 (Bookworm), Debian 11 (Bullseye), Debian 10 (Buster) shipped it. The page shows this text now.
Fragment Sequencing Simulation
Flags it lists
-
--454-background-noise-mean -
--454-background-noise-stddev -
--454-no-sqrt-in-std-dev -
--454-proportionality-factor -
--454-read-length-max -
--454-read-length-mean -
--454-read-length-min -
--454-read-length-model -
--454-read-length-stddev -
--bs-seq-conversion-rate -
--bs-seq-protocol -
--embed-read-info -
--enable-bs-seq -
--force-single-end -
--help -
--illumina-error-profile-file -
--illumina-left-template-fastq -
--illumina-mismatch-quality-mean-begin -
--illumina-mismatch-quality-mean-end -
--illumina-mismatch-quality-stddev-begin -
--illumina-mismatch-quality-stddev-end -
--illumina-position-raise -
--illumina-prob-deletion -
--illumina-prob-insert -
--illumina-prob-mismatch -
--illumina-prob-mismatch-begin -
--illumina-prob-mismatch-end -
--illumina-prob-mismatch-scale -
--illumina-quality-mean-begin -
--illumina-quality-mean-end -
--illumina-quality-stddev-begin -
--illumina-quality-stddev-end -
--illumina-read-length -
--illumina-right-template-fastq -
--in -
--out -
--out-right -
--quiet -
--read-name-prefix -
--sanger-prob-deletion-begin -
--sanger-prob-deletion-end -
--sanger-prob-insertion-begin -
--sanger-prob-insertion-end -
--sanger-prob-mismatch-begin -
--sanger-prob-mismatch-end -
--sanger-prob-mismatch-scale -
--sanger-quality-error-end-mean -
--sanger-quality-error-end-stddev -
--sanger-quality-error-start-mean -
--sanger-quality-error-start-stddev -
--sanger-quality-match-end-mean -
--sanger-quality-match-end-stddev -
--sanger-quality-match-start-mean -
--sanger-quality-match-start-stddev -
--sanger-read-length-error -
--sanger-read-length-max -
--sanger-read-length-mean -
--sanger-read-length-min -
--sanger-read-length-model -
--seed -
--seq-mate-orientation -
--seq-strands -
--seq-technology -
--verbose -
--version -
--very-verbose -
-h -
-i -
-o -
-or -
-q -
-v -
-vv