marscan1e
Finds matrix/scaffold recognition (mrs) signatures in dna sequences
Usage
marscan -sequence
seqall
-outfile
report
marscan -help
Overview
marscan is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Gene finding,Nucleic:Functional sites,Nucleic:Transcription" command group(s).
Options
Input section
-
-sequence seqall
Output section
-
-outfile report -
File for output of MAR/SAR recognition signature (MRS) regions. This contains details of the MRS in normal GFF format. The MRS consists of two recognition sites, one of 8 bp and one of 16 bp on either sense strand of the genomic DNA, within 200 bp of each other.
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.