maq.pl1
Helper script for maq
Usage
maq.pl <command>
[options]
<input>
[]
Overview
helper script for maq
Version: 0.4.7
Options.
easyrun
|
simple pipeline for small dataset |
|---|---|
demo
|
demonstration of maq functionalities (for SE only) |
SNPfilter
|
filter SNPs |
statmap
|
extract statistics from the error output of 'maq map' |
chrpt2snp
|
convert dbSNP's chr_rpt file to .snp file |
ucsc2snp
|
convert UCSC's SNP dump to .snp file |
fastq2bfq
|
convert fastq in batch |
cat2pair
|
convert paired end reads format |
sv
|
call structural variations |
indelpe
|
post-processing indelpe output |
Releases
Unchanged in 5 releases since Debian 9 (Stretch).