mapping_to_phandango1
Create a plot file for visualisation in phandango
Usage
mapping_to_phandango -s
<sam_file>
-k
<seer_kmers>
>
phandango.plot
Overview
Creates a plot file for visualisation in phandango
Options
Required
-
-s, --sam -
Sam file of kmers mapped to reference (unsorted)
-
-k, --kmers -
Kmers that were mapped
Optional
-
-m, --map -
Minimum mapping quality
-
-h, --help -
Displays this message
Releases
Unchanged in 5 releases since Debian 9 (Stretch).