lefse_plot_cladogram.py1

positional arguments:

optional arguments:

-h, --help

show this help message and exit

--clade_sep CLADE_SEP

--max_lev MAX_LEV

--max_point_size MAX_POINT_SIZE

--min_point_size MIN_POINT_SIZE

--point_edge_width MARKEREDGEWIDTH

--siblings_connector_width SIBLINGS_CONNECTOR_WIDTH

--parents_connector_width PARENTS_CONNECTOR_WIDTH

--radial_start_lev RADIAL_START_LEV

--labeled_start_lev LABELED_START_LEV

--labeled_stop_lev LABELED_STOP_LEV

--abrv_start_lev ABRV_START_LEV

--abrv_stop_lev ABRV_STOP_LEV

--expand_void_lev EXPAND_VOID_LEV

--class_legend_vis CLASS_LEGEND_VIS

--colored_connector COLORED_CONNECTORS

--alpha ALPHA

--title TITLE

--sub_clade SUB_CLADE

--title_font_size TITLE_FONT_SIZE

--right_space_prop R_PROP

--left_space_prop L_PROP

--label_font_size LABEL_FONT_SIZE

--background_color {k,w}

set the color of the background

--colored_labels {0,1}

draw the label with class color (1) or in black (0)

--class_legend_font_size CLASS_LEGEND_FONT_SIZE

--dpi DPI

--format {png,svg,pdf}

the format for the output file

--all_feats ALL_FEATS