lambda2-searchn(1) on Linux
The text 4cae2a734216, as Debian 12 (Bookworm), Debian 11 (Bullseye) shipped it.
the Local Aligner for Massive Biological DatA
Flags it lists
-
--adaptive-seeding -
--band -
--copyright -
--e-value -
--extension-mode -
--filter-putative-abundant -
--filter-putative-duplicates -
--full-help -
--help -
--index -
--merge-putative-siblings -
--num-matches -
--output -
--output-columns -
--percent-identity -
--pre-scoring -
--pre-scoring-threshold -
--query -
--sam-bam-clip -
--sam-bam-seq -
--sam-bam-tags -
--sam-with-refheader -
--score-gap -
--score-gap-open -
--score-match -
--score-mismatch -
--seed-delta -
--seed-delta-increases-length -
--seed-half-exact -
--seed-length -
--seed-offset -
--threads -
--verbosity -
--version -
--x-drop -
-b -
-e -
-h -
-hh -
-i -
-m -
-n -
-o -
-q -
-t -
-v -
-x