kmc_tools-union1
Calculate union of two kmc databases
Usage
kmc_tools union
<input1
[input1_params]
>
<input2
[input2_params]
>
<output
[output_params]
>
Overview
The output database will contain all k-mers present in both input sets. For the same k-mers in the first and the second input, the counter in the output is equal to the sum from both inputs.
Options
For each input there are additional parameters:
-ci<value>
exclude k-mers occurring less than <value> times
-cx<value>
exclude k-mers occurring more of than <value> times
For output there are additional parameters:
-ci<value>
exclude k-mers occurring less than <value> times
-cx<value>
exclude k-mers occurring more of than <value> times
-cs<value>
maximal value of a counter
Examples
kmc -k28 file1.fastq kmers1 tmp kmc -k28 file2.fastq kmers2 tmp kmc_tools union kmers1 -ci3 -cx70000 kmers2 kmers1_kmers2_union -cs65536
Copying
KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.
Releases
5 releases since Debian 9 (Stretch); the text changed 4 times.