kmc_tools-sort1
Sort kmc databases
Usage
kmc_tools sort
<inputdb>
[input_params]
<output>
[output_params]
Overview
Converts database produced by KMC2.x to KMC1.x database format (which contains k-mers in sorted order)
Options
For each input there are additional parameters:
-ci<value>
exclude k-mers occurring less than <value> times
-cx<value>
exclude k-mers occurring more of than <value> times
For output there are additional parameters:
-cs<value>
maximal value of a counter
Examples
kmc_tools sort wy_kmc2 -ci3 -cx1000 wy_kmc1 -cs255
Copying
KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.
Releases
5 releases since Debian 9 (Stretch); the text changed 4 times.