kmc_tools-histogram(1)

kmc_tools-histogram1

Produce histogram of k-mer occurrences

Usage

kmc_tools histogram <inputdb> [input_params] <output>

Overview

This command produces a histogram of k-mer occurrences.

Options

For each input there are additional parameters:

-ci<value>

exclude k-mers occurring less than <value> times

-cx<value>

exclude k-mers occurring more of than <value> times

Examples

kmc_tools histogram wy_kmc2 -ci3 -cx1000 histo.txt

Copying

KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.

Releases

5 releases since Debian 9 (Stretch); the text changed 4 times.

  1. 9
  2. 10
  3. 11
  4. 12
  5. 13

Author

KMC was originally written by:

• Sebastian Deorowicz ( <[email protected]>)

• Marek Kokot

• Szymon Grabowski

• Agnieszka Debudaj-Grabysz

From kmc 3.2.4+dfsg-1+b3 in Debian 13 (Trixie). Parsed by carta from the page's man source.