kmc_tools-counters_subtract1
Calculate counters subtraction of two kmc databases
Usage
kmc_tools counters_subtract
<input1
[input1_params]
>
<input2
[input2_params]
>
<output
[output_params]
>
Overview
The output database will contain only k-mers that are present in the first input set and have counters higher than the appropriate k-mers in the second set. For each k-mer the counter is equal to the difference between the counter in the first set and the counter in the second set.
Options
For each input there are additional parameters:
-ci<value>
exclude k-mers occurring less than <value> times
-cx<value>
exclude k-mers occurring more of than <value> times
For output there are additional parameters:
-ci<value>
exclude k-mers occurring less than <value> times
-cx<value>
exclude k-mers occurring more of than <value> times
-cs<value>
maximal value of a counter
Examples
kmc - k28 file1.fastq kmers1 tmp kmc - k28 file2.fastq kmers2 tmp kmc_tools counters_subtract kmers1 kmers2 kmers1_kmers2_counters_subtract
Copying
KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.
Releases
5 releases since Debian 9 (Stretch); the text changed 4 times.