kissplice(1) on Linux
The text c503b2a25221, as Debian 12 (Bookworm) shipped it.
local assembly of SNPs, indels and AS events
Flags it lists
-
--counts -
--get-low-complexity-info -
--get-mapping-info -
--get-redundance-info -
--help -
--keep-bccs -
--keep-counts -
--keep-low-complexity -
--keep-redundancy -
--lc-entropy-threshold -
--max-memory -
--min_overlap -
--mismatches -
--not-experimental -
--output-branch-count -
--output-context -
--output-path -
--stranded -
--strandedAbsoluteThreshold -
--strandedRelativeThreshold -
--timeout -
--type1-only -
--version -
-C -
-M -
-b -
-c -
-d -
-e -
-g -
-h -
-k -
-l -
-m -
-o -
-r -
-s -
-t -
-u -
-v -
-y