kalignfmt1
Global and progressive multiple sequence alignment
Usage
kalignfmt-avx2 -i
<seq
file>
-o
<out
aln>
Overview
Kalign (3.3.4)
Options
-
--format -
: Output format. [Fasta]
-
--reformat -
: Reformat existing alignment. [NA]
-
--changename -
: Change sequence names to 1 .. N. [NA]
-
--unalign -
: Remove gaps and write to fasta. [NA]
-
--clean -
: Perform additional checks on alignment. [NA]
-
--version (-V/-v) -
: Prints version. [NA]
Examples
Passing sequences via stdin:
-
cat input.fa | kalign -f fasta > out.afa
Combining multiple input files:
-
kalign seqsA.fa seqsB.fa seqsC.fa -f fasta > combined.afa
Releases
Unchanged in 2 releases since Debian 12 (Bookworm).