kalign(1) on Linux
The text 6bdddbe1fe6a, as Debian 5.0 (Lenny) shipped it.
performs multiple alignment of biological sequences.
Flags it lists
-
-bonus -
-e -
-feature -
-g -
-gap_ext -
-gap_open -
-gapextension -
-gapopen -
-gpe -
-gpo -
-i -
-in -
-input -
-m -
-matrix_bonus -
-o -
-out -
-output -
-q -
-quiet -
-s -
-t -
-terminal_gap_extension_penalty -
-tgpe -
-z -
-zcutoff