jgi_summarize_bam_contig_depths(1) on Linux
The text 51bf8bf41b81, as Debian 13 (Trixie), Debian 12 (Bookworm), Debian 11 (Bullseye) shipped it. The page shows this text now.
jgi_summarize_bam_contig_depths nosha
Flags it lists
-
--gcWindow -
--includeEdgeBases -
--maxEdgeBases -
--minContigDepth -
--minContigLength -
--minMapQual -
--noIntraDepthVariance -
--outputDepth -
--outputGC -
--outputKmers -
--outputReadStats -
--pairedContigs -
--percentIdentity -
--referenceFasta -
--showDepth -
--shredDepth -
--shredLength -
--unmappedFastq -
--weightMapQual