iva(1) on Linux
The text 493c4e7758d5, as Debian 12 (Bookworm) shipped it.
iterative virus assembler
Flags it lists
-
--adapters -
--contigs -
--ctg_first_trim -
--ctg_iter_trim -
--ext_max_bases -
--ext_min_clip -
--ext_min_cov -
--ext_min_ratio -
--fr -
--help -
--keep_files -
--kmc_onethread -
--make_new_seeds -
--max_contigs -
--max_insert -
--min_trimmed_length -
--pcr_primers -
--reads_fwd -
--reads_rev -
--reference -
--seed_ext_max_bases -
--seed_ext_min_cov -
--seed_ext_min_ratio -
--seed_max_kmer_cov -
--seed_min_kmer_cov -
--seed_overlap_length -
--seed_start_length -
--seed_stop_length -
--smalt_id -
--smalt_k -
--smalt_s -
--test -
--threads -
--trimmo_qual -
--trimmomatic -
--verbose -
--version -
-f -
-h -
-i -
-k -
-r -
-s -
-t -
-v -
-y