itksnap1

Usage

Overview

SNAP provides semi-automatic segmentation of structures in medical images (e.g. magnetic resonance images of the brain) using active contour methods, as well as manual delineation and image navigation. Noteworthy features are:

* Linked cursor for seamless 3D navigation

* Manual segmentation in three orthogonal planes at once

* Support for many different 3D image formats, including NIfTI

* Support for concurrent, linked viewing and segmentation of multiple images

* Limited support for color images (e.g., diffusion tensor maps)

* 3D cut-plane tool for fast post-processing of segmentation results

Options

--grey, -g FILE

Load greyscale image FILE (optional)

--segmentation, -s FILE

Load segmentation image FILE

--labels, -l FILE

Load label description file FILE

--rgb FILE

Load RGB image FILE (as overlay if combined with -g)