hmmindex(1)

hmmindex1

Usage

hmmindex [options] database

Overview

hmmindex is a utility that creates a binary SSI ("squid sequence index" format) index for an HMM database file called database. The new index file is named database.ssi. An SSI index file is required for hmmfetch to work, and also for the PVM implementation of hmmpfam.

Options

-h

Print brief help; includes version number and summary of all options, including expert options.

Releases

6 releases since Debian 2.2 (Potato); the text changed 1 time.

  1. 2.2–3.1
  2. 4.0–6.0

Author

Sean Eddy
HHMI/Dept. of Genetics
Washington Univ. School of Medicine
4566 Scott Ave.
St Louis, MO 63110 USA
http://www.genetics.wustl.edu/eddy/

From hmmer 2.3.2-5 in Debian 6.0 (Squeeze). Parsed by carta from the page's man source.