hilive-build1
Index creation tool for hilive - realtime alignment of illumina reads
Usage
hilive-build [options]
Options
General options:
-
-h [ --help ] -
Print this help message and exit
-
-l [ --license ] -
Print licensing information and exit
Required options:
-i[--input] arg-
Reference genome(s) in (multi-)FASTA format. [REQUIRED]
-o[--out-prefix] arg-
Output file prefix. Several files with the same prefix will be created. [REQUIRED]
Other options:
-
--do-not-convert-spaces -
Do not convert all spaces in reference ids to underscores [Default: converting is on]
-
--trim-after-space -
Trim all reference ids after first space [Default: false]
Examples
hilive-build --input hg19.fa --out-prefix ./index/hg19
Releases
4 releases since Debian 9 (Stretch); the text changed 1 time.
--do-not-convert-spaces since Debian 11 (Bullseye);
--trim-after-space since Debian 11 (Bullseye);
-l since Debian 11 (Bullseye).