hhconsensus(1) on Linux
The text 6aa66fe087ee, as Debian 7 (Wheezy) shipped it.
calculate the consensus sequence for an A3M/FASTA input file
Flags it lists
-
-M -
-addss -
-cov -
-i -
-id -
-o -
-oa2m -
-oa3m -
-ofas -
-qid -
-qsc -
-s -
-v