hhblits(1) on Linux
The text 3f911c081629, as Debian 7 (Wheezy) shipped it.
fast homology detection method to iteratively search a HMM database
Flags it lists
-
-B -
-E -
-M -
-Ofas -
-Z -
-addss -
-aliw -
-all -
-alt -
-atab -
-b -
-cov -
-cpu -
-cslib -
-d -
-diff -
-e -
-egq -
-egt -
-gapb -
-gapd -
-gape -
-gapf -
-gapg -
-gaph -
-gapi -
-i -
-id -
-mact -
-maxfilt -
-maxres -
-n -
-neff -
-noaddfilter -
-nocontxt -
-nodbfilter -
-noprefilt -
-norealign -
-o -
-oa2m -
-oa3m -
-oalis -
-ohhm -
-opsi -
-p -
-pca -
-pcb -
-pcc -
-pcm -
-pre_pca -
-psipred_data -
-qhhm -
-qid -
-qsc -
-realign_max -
-seq -
-shift -
-ssm -
-ssw -
-v -
-z