gustaf(1) on Linux
The text b1d9494c791e, as Debian 13 (Trixie), Debian 12 (Bookworm), Debian 11 (Bullseye), Debian 10 (Buster) shipped it. The page shows this text now.
Gustaf - Generic mUlti-SpliT Alignment Finder: Tool for split-read mapping allowing multiple splits.
Flags it lists
-
--abundanceCut -
--alphabet -
--breakendThresh -
--breakpoint-pos-range -
--complex-breakpoints -
--disableThresh -
--dots -
--epsilon -
--forward -
--gapThresh -
--gffOut -
--help -
--initGapThresh -
--invPen -
--jobName -
--kmer -
--library-error -
--library-size -
--matchfile -
--mate-support -
--minLength -
--numMatches -
--numThreads -
--orderPen -
--overlapThresh -
--repeatLength -
--repeatPeriod -
--revcompl -
--reverse -
--sortThresh -
--support -
--tandemThresh -
--transPen -
--vcfOut -
--verbose -
--verification -
--version -
--xDrop -
-a -
-bth -
-c -
-cbp -
-do -
-dt -
-e -
-f -
-gff -
-gth -
-h -
-ip -
-ith -
-j -
-k -
-l -
-le -
-ll -
-m -
-mst -
-n -
-nth -
-op -
-oth -
-pth -
-r -
-rc -
-rl -
-rp -
-s -
-st -
-tp -
-tth -
-v -
-vcf -
-vs -
-x