gthgetseq1
Get fasta sequences from genomethreader files
Usage
gthgetseq {-getcdna | -getprotein | -getgenomic
[option ...]
[file ...]}
Overview
Get FASTA sequences from GenomeThreader files containing intermediate results. The sequences are shown on stdout.
Options
-
-getcdna -
get cDNA/EST sequences default: no
-
-getcdnacomp -
get complement of cDNA/EST sequences default: no
-
-getprotein -
get protein sequences default: no
-
-getproteincomp -
get complement of protein sequences default: no
-
-getgenomic -
get genomic sequences default: no
-
-getgenomiccomp -
get complement of genomic sequences default: no
-
-minalignmentscore -
set the minimum alignment score for spliced alignments to be included into the set of spliced alignments default: 0.00
-
-maxalignmentscore -
set the maximum alignment score for spliced alignments to be included into the set of spliced alignments default: 1.00
-
-mincoverage -
set the minimum coverage for spliced alignments to be included into the set of spliced alignments default: 0.00
-
-maxcoverage -
set the maximum coverage for spliced alignments to be included into the set of spliced alignments default: 9999.99
-
-gzip -
gzip compressed input file(s) default: no
-
-bzip2 -
bzip2 compressed input file(s) default: no
-
-help -
display help and exit
-
-version -
display version information and exit
Releases
3 releases since Debian 11 (Bullseye); the text changed 2 times.