gthfilestat1

Usage

Overview

Show statistics about spliced alignments in GenomeThreader output files containing intermediate results.

Options

-minalignmentscore

set the minimum alignment score for spliced alignments to be included into the set of spliced alignments default: 0.00

-maxalignmentscore

set the maximum alignment score for spliced alignments to be included into the set of spliced alignments default: 1.00

-mincoverage

set the minimum coverage for spliced alignments to be included into the set of spliced alignments default: 0.00

-maxcoverage

set the maximum coverage for spliced alignments to be included into the set of spliced alignments default: 9999.99

-v

be verbose default: no

-help

display help and exit

-version

display version information and exit