gth(1) on Linux
The text c48906fe0b4b, as Debian 12 (Bookworm) shipped it.
predict genome structures
Flags it lists
-
-autointroncutout -
-bssm -
-bzip2 -
-cdna -
-cdnaforward -
-createindicesonly -
-cutoffsminexonlen -
-deletionweight -
-dpminexonlen -
-dpminintronlen -
-duplicatecheck -
-enrichchains -
-exact -
-exdrop -
-exondistri -
-f -
-fastdp -
-finalstopcodon -
-first -
-force -
-frompos -
-gcmaxgapwidth -
-gcmincoverage -
-genomic -
-gff3out -
-gs2out -
-gzip -
-help -
-help+ -
-icdeltaincrease -
-icinitialdelta -
-iciterations -
-icminremintronlen -
-identityweight -
-intermediate -
-introncutout -
-introndistri -
-inverse -
-leadcutoffsmode -
-maskpolyatails -
-maxalignmentscore -
-maxcoverage -
-md5ids -
-minalignmentscore -
-minaveragessp -
-mincoverage -
-mincutoffs -
-minmatchlen -
-minorflen -
-mismatchweight -
-noautoindex -
-nou12intronmodel -
-o -
-online -
-paralogs -
-pglgentemplate -
-prhdist -
-prminmatchlen -
-probdelgen -
-probies -
-protein -
-proteinsmap -
-prseedlength -
-r -
-refseqcovdistri -
-scorematrix -
-scoreminexonlen -
-seedlength -
-shortexonpenal -
-shortintronpenal -
-showintronmaxlen -
-showseqnums -
-skipalignmentout -
-skipindexcheck -
-sortags -
-sortagswf -
-species -
-startcodon -
-termcutoffsmode -
-topos -
-translationtable -
-u12donorprob -
-u12donorprob1mism -
-undetcharweight -
-v -
-version -
-wdecreasedoutput -
-width -
-wzerotransition -
-xmlout