gt-tirvish(1) on Linux
The text f0a9f7c4180a, as Debian 12 (Bookworm) shipped it.
Identify Terminal Inverted Repeat (TIR) elements,such as DNA transposons.
Flags it lists
-
-del -
-help -
-help+ -
-hmms -
-index -
-ins -
-mat -
-maxgaplen -
-maxtirdist -
-maxtirlen -
-maxtsd -
-md5 -
-mintirdist -
-mintirlen -
-mintsd -
-mis -
-overlaps -
-pdomcutoff -
-pdomevalcutoff -
-refseqs -
-seed -
-seqids -
-similar -
-version -
-vic -
-xdrop