gt-tallymer-search1
Search a set of k-mers in an index constructed by ``gt tallymer mkindex''.
Usage
gt tallymer
search
[options]
-tyr
tallymer-index
-q
queryfile0
[queryfile1..]
[options]
Overview
-
-tyr [string] -
specify tallymer-index (default: undefined)
-
-q -
specify query file names
-
-strand [string] -
specify the strand to be searched: use f (for forward strand) or p (for reverse complemented strand) or fp (for both); default is f (default: f)
-
-output -
specify output flags (qseqnum, qpos, counts, sequence)
-
-v [yes|no] -
be verbose (default: no)
-
-help -
display help and exit
-
-version -
display version information and exit
Releases
6 releases since Debian 8 (Jessie); the text changed 5 times.