gt-tallymer-occratio1
Compute occurrence ratio for a set of sequences represented by an enhanced suffix array.
Usage
gt tallymer
occratio
[options]
-esa
suffixerator-index
[options]
Overview
-
-esa [string] -
specify suffixerator-index (mandatory option) (default: undefined)
-
-minmersize [value] -
specify minimum mer size for which to compute the occurrence distribution (default: 0)
-
-maxmersize [value] -
specify maximum mer size for which to compute the occurrence distribution (default: 0)
-
-step [value] -
specify step size when specifying mer sizes (default: 1)
-
-mersizes -
specify mer sizes as non-empty sequence of non decreasing positive integers
-
-output -
use combination of the following keywords: unique nonunique nonuniquemulti relative total to specify kind of output
-
-scan [yes|no] -
read suffixerator-index sequentially instead of mapping it to memory (default: no)
-
-v [yes|no] -
be verbose (default: no)
-
-help -
display help and exit
-
-version -
display version information and exit
Releases
6 releases since Debian 8 (Jessie); the text changed 5 times.