gt-stat1
Show statistics about features contained in gff3 files.
Usage
gt stat
[option ...]
[GFF3_file ...]
Overview
-
-genelengthdistri [yes|no] -
show gene length distribution (default: no)
-
-genescoredistri [yes|no] -
show gene score distribution (default: no)
-
-exonlengthdistri [yes|no] -
show exon length distribution (default: no)
-
-exonnumberdistri [yes|no] -
show exon number distribution (default: no)
-
-intronlengthdistri [yes|no] -
show intron length distribution (default: no)
-
-cdslengthdistri [yes|no] -
show CDS length distribution (measured in amino acids) (default: no)
-
-source [yes|no] -
show the set of used source tags (column 2 in regular GFF3 lines) (default: no)
-
-addintrons [yes|no] -
add intron features between existing exon features (before computing stats) (default: no)
-
-v [yes|no] -
be verbose (default: no)
-
-o [filename] -
redirect output to specified file (default: undefined)
-
-gzip [yes|no] -
write gzip compressed output file (default: no)
-
-bzip2 [yes|no] -
write bzip2 compressed output file (default: no)
-
-force [yes|no] -
force writing to output file (default: no)
-
-help -
display help and exit
-
-version -
display version information and exit
Releases
6 releases since Debian 8 (Jessie); the text changed 5 times.