gt-sketch1
Create graphical representation of gff3 annotation files.
Usage
gt sketch
[option ...]
image_file
[GFF3_file ...]
Overview
-
-pipe [yes|no] -
use pipe mode (i.e., show all gff3 features on stdout) (default: no)
-
-flattenfiles [yes|no] -
do not group tracks by source file name and remove file names from track description (default: no)
-
-seqid [string] -
sequence region identifier default: first one in file
-
-start [value] -
start position default: first region start
-
-end [value] -
end position default: last region end
-
-width [value] -
target image width (in pixel) (default: 800)
-
-style [string] -
style file to use (default: undefined)
-
-format [...] -
output graphics format choose from png|pdf|svg|ps (default: png)
-
-input [...] -
input data format choose from gff|bed|gtf (default: gff)
-
-addintrons [yes|no] -
add intron features between existing exon features (before drawing) (default: no)
-
-unsafe [yes|no] -
enable unsafe mode for style file (default: no)
-
-v [yes|no] -
be verbose (default: no)
-
-force [yes|no] -
force writing to output file (default: no)
-
-help -
display help and exit
-
-version -
display version information and exit
Releases
6 releases since Debian 8 (Jessie); the text changed 5 times.