gt-simreads1
Simulate sequencing reads from random positions in the input sequence(s).
Usage
gt simreads
[option ...]
<encseq>
Overview
-
-num [value] -
desired number of reads (default: undefined)
-
-coverage [value] -
desired coverage of the reads (default: undefined)
-
-len [value] -
fixed read length (default: undefined)
-
-minlen [value] -
minimal read length (default: undefined)
-
-maxlen [value] -
maximal read length (default: undefined)
-
-distlen [string] -
use read length distribution file (in the output format of the seqstat tool) (default: undefined)
-
-o [filename] -
redirect output to specified file (default: undefined)
-
-gzip [yes|no] -
write gzip compressed output file (default: no)
-
-bzip2 [yes|no] -
write bzip2 compressed output file (default: no)
-
-force [yes|no] -
force writing to output file (default: no)
-
-p [yes|no] -
show a progress bar (default: no)
-
-v [yes|no] -
be verbose (default: no)
-
-ds [string] -
output distribution of starting positions to specified file (default: undefined)
-
-dl [string] -
output distribution of read lengths to specified file (default: undefined)
-
-ss [yes|no] -
simulate reads in forward direction only (default: no)
-
-help -
display help for basic options and exit
-
-help+ -
display help for all options and exit
-
-version -
display version information and exit
Releases
6 releases since Debian 8 (Jessie); the text changed 5 times.