gt-sequniq1
Filter out repeated sequences in given sequence files.
Usage
gt sequniq
[option ...]
sequence_file
[]
Overview
-
-rev [yes|no] -
also filter out sequences whose reverse complement is identical to a sequence already output (default: no)
-
-v [yes|no] -
be verbose (default: no)
-
-width [value] -
set output width for FASTA sequence printing (0 disables formatting) (default: 0)
-
-o [filename] -
redirect output to specified file (default: undefined)
-
-gzip [yes|no] -
write gzip compressed output file (default: no)
-
-bzip2 [yes|no] -
write bzip2 compressed output file (default: no)
-
-force [yes|no] -
force writing to output file (default: no)
-
-help -
display help and exit
-
-version -
display version information and exit
The tool will only remove identical duplicates of sequences, not substrings contained within other sequences.
Releases
6 releases since Debian 8 (Jessie); the text changed 5 times.