gt-seqstat1

Usage

Overview

-v [yes|no]

be verbose (default: no)

-distlen [yes|no]

show distribution of sequence length (default: no)

-b [value]

bucket size for distlen option (default: 100)

-binary [yes|no]

use a binary format for distlen output output filename: <first_input_filename>.distlen bucketsize: 1 (default: no)

-contigs [yes|no]

summary of contigs set statistics (default: yes)

-nstats

list of N-values to calculate statistics for, terminated by --; if none given, N50 and N80 will be calculated

-astretch [yes|no]

show distribution of A-substrings (default: no)

-genome [value]

set genome length for NG50/NG80 calculation (default: 0)

-help

display help for basic options and exit

-help+

display help for all options and exit

-version

display version information and exit