gt-seqorder1
Output sequences as multifasta in specified order.
Usage
gt {seqorder
(-invert | -sort | -revsort | -shuffle | -sorthdr | -sorthdrnum)
encseq}
Overview
-
-invert [yes|no] -
invert order of sequences (default: no)
-
-sort [yes|no] -
sort sequences lexicographically (by actual sequence) (default: no)
-
-revsort [yes|no] -
sort sequences in reverse lexicographic order (default: no)
-
-sorthdr [yes|no] -
sort sequences lexicographically by sequence header (default: no)
-
-sorthdrnum [yes|no] -
sort sequences numerically by sequence header (default: no)
-
-shuffle [yes|no] -
shuffle sequences pseudo-randomly (default: no)
-
-sortlength [yes|no] -
sort by decreasing length (default: no)
-
-help -
display help and exit
-
-version -
display version information and exit
Releases
6 releases since Debian 8 (Jessie); the text changed 5 times.
-sorthdr since Debian 9 (Stretch);
-sorthdrnum since Debian 9 (Stretch);
-sortlength since Debian 10 (Buster).