gt-seqfilter1
Filter the given sequence file(s) and show the results on stdout.
Usage
gt seqfilter
[option ...]
[sequence_file ...]
Overview
-
-minlength [value] -
set minimum length a sequence must have to pass the filter (default: undefined)
-
-maxlength [value] -
set maximum length a sequence can have to pass the filter (default: undefined)
-
-maxseqnum [value] -
set the maximum number of sequences which can pass the filter (default: undefined)
-
-sample [value] -
set a probability for each sequence to pass the filter (default: 1.000000)
-
-step [value] -
only every step-th sequence passes the filter (default: 1)
-
-nowildcards [yes|no] -
filter out seqences containing wildcards (default: no)
-
-width [value] -
set output width for FASTA sequence printing (0 disables formatting) (default: 0)
-
-o [filename] -
redirect output to specified file (default: undefined)
-
-gzip [yes|no] -
write gzip compressed output file (default: no)
-
-bzip2 [yes|no] -
write bzip2 compressed output file (default: no)
-
-force [yes|no] -
force writing to output file (default: no)
-
-help -
display help and exit
-
-version -
display version information and exit
Releases
6 releases since Debian 8 (Jessie); the text changed 5 times.
-nowildcards since Debian 9 (Stretch);
-sample since Debian 9 (Stretch);
-step since Debian 9 (Stretch).