gt-matstat(1)

gt-matstat1

Compute matching statistics.

Usage

gt matstat [options ...] -query queryfile []

Overview

-fmi [string]

specify fmindex (default: undefined)

-esa [string]

specify suffix array (default: undefined)

-pck [string]

specify packed index (default: undefined)

-query

specify queryfiles

-min [value]

only output length if >= given minimum length (default: 0)

-max [value]

only output length if ⇐ given maximum length (default: 0)

-output

set output flags (sequence, querypos, subjectpos)

-help

display help and exit

-version

display version information and exit

Additional information

For detailed information, please refer to the manual of matstat.

Releases

6 releases since Debian 8 (Jessie); the text changed 5 times.

  1. 8
  2. 9
  3. 10
  4. 11
  5. 12
  6. 13

Reporting bugs

Report bugs to <[email protected]>.

From genometools 1.6.5+ds-2.2 in Debian 13 (Trixie). Parsed by carta from the page's man source.