gt-hop(1) on Linux
The text 8d3f00c0dd97, as Debian 12 (Bookworm) shipped it.
Cognate sequence-based homopolymer error correction.
Flags it lists
-
-aggressive -
-allow-muliple -
-altmax -
-ann -
-c -
-clenmax -
-cogmin -
-conservative -
-covmin -
-expert -
-ft -
-help -
-help+ -
-hmin -
-map -
-mapqmin -
-moderate -
-o -
-outprefix -
-qmax -
-read-hmin -
-reads -
-sam -
-v -
-version