gt-encseq-decode1
Decode/extract encoded sequences.
Usage
gt {encseq
decode
(sequence_file | indexname)}
Overview
-
-mirrored [yes|no] -
virtually append the reverse complement of each sequence (default: no)
-
-lossless [yes|no] -
allow lossless original sequence retrieval (default: no)
-
-dir [string] -
specify reading direction (fwd, cpl, rev, rcl) (default: fwd)
-
-singlechars [yes|no] -
do not use a GtEncseqReader but access each sequence character separately (default: no)
-
-seq [value] -
extract sequence identified by its number (default: undefined)
-seqrange [start end]
extract multiple consecutive sequences (default: undefined)
-
-output [...] -
specify output format (choose from fasta|concat) (default: fasta)
-range [start end]
concatenated range to extract (implies -output concat) (default: undefined)
-
-sepchar [string] -
specify character to print as GT_SEPARATOR (default: |)
-
-help -
display help for basic options and exit
-
-help+ -
display help for all options and exit
-
-version -
display version information and exit
Releases
6 releases since Debian 8 (Jessie); the text changed 5 times.