gt-compreads-decompress1
Decodes a file of compressed reads.
Usage
gt compreads
decompress
[option ...]
(-file
file)
Overview
-
-v [yes|no] -
be verbose (default: no)
-
-descs [yes|no] -
enable description decoding (default: no)
-
-file [string] -
specify base name of files containing HCR. (default: undefined)
-
-name [string] -
specify base name for decoded hcr (suffix will be ".fastq") (default: undefined)
-
-smap [string] -
specify file containing alphabetdescription (file must be an .al1 file). If "-smap" is not set, dna alphabet is used. (default: undefined)
-range [start end]
decode multiple consecutive reads. If range is not specified, the entire file will be decoded. (default: undefined)
-
-width [value] -
set width of output, 0 disables formatting. line breaks in quality strings can cause problems with parsers, use with care (default: 0)
-
-help -
display help and exit
-
-version -
display version information and exit
Releases
6 releases since Debian 8 (Jessie); the text changed 5 times.
-width since Debian 9 (Stretch).