gmt-music-plot-mutation-relation1p
Makes plots for results from the mutation-relation tool
Usage
gmt music
plot
mutation-relation
--input-matrix=?
--output-pdf=?
[--skip-zero-mut-samples]
[--genes-to-plot=?]
[--plot-genes-in-order-listed]
gmt music plot mutation-relation
Version
This document describes gmt music plot mutation-relation version 0.04 (2018-07-05 at 09:17:13)
Required arguments
input-matrix String
|
A gene/sample matrix generated by the mutation-relation tool |
|---|---|
output-pdf String
|
An output pdf file to draw the plot to |
Optional arguments
- skip-zero-mut-samples Boolean
-
Don't plot samples that have no mutations on any gene being plotted
Default value 'true' if not specified
- noskip-zero-mut-samples Boolean
-
Make skip-zero-mut-samples 'false'
- genes-to-plot String
-
Comma-separated list of genes to plot (example: DNMT3A,NPM1)
- plot-genes-in-order-listed Boolean
-
Plot the genes in the order that they're listed. Default is to plot them in descending order by number of mutations
Default value 'false' (--noplot-genes-in-order-listed) if not specified
- noplot-genes-in-order-listed Boolean
-
Make plot-genes-in-order-listed 'false'
Overview
Given a matrix generated using "music mutation-relation --mutation-matrix-file", this tool will generate a plot that highlights mutual exclusivity or concurrence between the mutation status of a predefined set of genes.
Releases
3 releases since Debian 8 (Jessie); the text changed 2 times.